Variant report

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:69354413..69356514-chr6:69361344..69363191,2	K562	blood:
2	chr6:69347861..69348766-chr6:69361860..69362824,2	K562	blood:
3	chr6:69355292..69359376-chr6:69359699..69365505,6	K562	blood:
4	chr6:69361875..69366635-chr6:69366839..69371569,10	K562	blood:
5	chr6:69361390..69364365-chr6:69454708..69457307,2	K562	blood:
6	chr6:69346849..69353858-chr6:69356877..69365508,11	K562	blood:
7	chr6:69359484..69364655-chr6:69364836..69370262,9	K562	blood:
8	chr6:69361193..69363364-chr6:69405270..69407471,2	K562	blood:
9	chr6:69342446..69344321-chr6:69361840..69364075,2	K562	blood:
10	chr6:69361693..69363656-chr6:69482162..69484655,2	K562	blood:
11	chr6:69361193..69364307-chr6:69405003..69407471,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000230910	Chromatin interaction

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2246093	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2246104	0.98[EUR][1000 genomes]
rs2253866	0.80[EUR][1000 genomes]
rs2585614	0.87[EUR][1000 genomes]
rs2585622	0.82[YRI][hapmap]
rs2585623	0.80[EUR][1000 genomes]
rs2585626	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2585627	0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2802691	0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2802693	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2802694	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2802696	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2802701	0.89[EUR][1000 genomes]
rs9360356	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
2	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69359600-69365400	Enhancers	Fetal Lung	lung
4	chr6:69359600-69365800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:69359800-69364200	Enhancers	Fetal Stomach	stomach
6	chr6:69360400-69363800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr6:69361000-69364200	Enhancers	Fetal Brain Female	brain
8	chr6:69361600-69363400	Enhancers	Fetal Kidney	kidney
9	chr6:69361600-69363600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69362000-69363000	Enhancers	Fetal Brain Male	brain
11	chr6:69362000-69363200	Enhancers	Right Atrium	heart
12	chr6:69362200-69362800	Enhancers	Brain Angular Gyrus	brain
13	chr6:69362200-69362800	Enhancers	Brain Cingulate Gyrus	brain
14	chr6:69362400-69362600	Enhancers	K562	blood
15	chr6:69362400-69363000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr6:69362400-69363800	Enhancers	Brain Hippocampus Middle	brain
17	chr6:69362400-69365000	Enhancers	Brain Anterior Caudate	brain
18	chr6:69362400-69365800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:69362400-69366600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:69362400-69367600	Enhancers	Brain Substantia Nigra	brain

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