Variant report

Variant	rs2246093
Chromosome Location	chr6:69354043-69354044
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2246104	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2253866	0.80[EUR][1000 genomes]
rs2585614	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2585623	0.80[EUR][1000 genomes]
rs2585626	0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2585627	0.98[AFR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2802691	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802692	0.97[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2802693	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2802694	0.87[EUR][1000 genomes]
rs2802696	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2802701	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9360356	0.81[ASN][1000 genomes]
rs9791207	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69350600-69355000	Weak transcription	Right Ventricle	heart
2	chr6:69350800-69362000	Weak transcription	Right Atrium	heart
3	chr6:69352200-69363200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69352200-69399000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:69352400-69361000	Weak transcription	Fetal Brain Female	brain
6	chr6:69353200-69359600	Weak transcription	Fetal Brain Male	brain
7	chr6:69353400-69356600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:69353600-69354600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:69353600-69354600	Weak transcription	Fetal Lung	lung
10	chr6:69353600-69354800	Enhancers	Brain Hippocampus Middle	brain
11	chr6:69353600-69355000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:69353600-69359600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:69353600-69359600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:69353600-69359600	Weak transcription	K562	blood
15	chr6:69353800-69355400	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:69353800-69356600	Weak transcription	Brain Anterior Caudate	brain
17	chr6:69353800-69358400	Weak transcription	Brain Substantia Nigra	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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