Variant report

Variant	rs2806403
Chromosome Location	chr1:58523985-58523986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:58523814-58524014	IMR90	lung:	n/a	n/a
2	FOS	chr1:58523586-58523991	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr1:58523543-58524062	MCF10A-Er-Src	breast:	n/a	n/a
4	MAFK	chr1:58523702-58524002	HepG2	liver:	n/a	n/a
5	FOS	chr1:58523543-58524079	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000235038	TF binding region
RPS26P15	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10443219	0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10443242	0.88[GIH][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10443244	0.84[ASN][1000 genomes]
rs10443245	0.90[CHB][hapmap];0.88[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10443246	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10443247	0.86[ASN][1000 genomes]
rs10889081	0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10889082	0.86[ASN][1000 genomes]
rs11207165	0.89[CHB][hapmap]
rs11207166	0.85[CHB][hapmap];0.90[CHD][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap]
rs12124142	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs12563473	0.90[CHB][hapmap];0.83[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1408925	0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116775	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17116802	0.90[CHB][hapmap];0.92[CHD][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs2025616	0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2808814	0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2808822	0.90[CHB][hapmap];0.92[CHD][hapmap];0.88[GIH][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];0.92[TSI][hapmap];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34678610	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3753508	0.86[ASN][1000 genomes]
rs3753509	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57920068	0.85[ASN][1000 genomes]
rs58537714	0.86[ASN][1000 genomes]
rs6587800	0.82[ASN][1000 genomes]
rs6657936	0.90[CHB][hapmap];0.95[CHD][hapmap];0.82[GIH][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes]
rs6677854	0.90[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs7515158	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7516066	0.90[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7527995	0.80[CHB][hapmap];0.80[CHD][hapmap];0.82[ASN][1000 genomes]
rs7548316	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58518800-58525600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:58520000-58525400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:58522200-58524800	Weak transcription	Right Ventricle	heart

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