Variant report

Variant	rs34678610
Chromosome Location	chr1:58525782-58525783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10443219	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10443242	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10443244	0.97[ASN][1000 genomes]
rs10443245	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10443246	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10443247	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10889081	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10889082	1.00[ASN][1000 genomes]
rs12124142	0.99[ASN][1000 genomes]
rs12563473	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1408925	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17116802	1.00[ASN][1000 genomes]
rs2025616	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2806403	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2808814	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2808822	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3753508	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3753509	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57920068	0.99[ASN][1000 genomes]
rs58537714	1.00[ASN][1000 genomes]
rs6587800	0.95[ASN][1000 genomes]
rs6657936	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6677854	0.99[ASN][1000 genomes]
rs7515158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7516066	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7527995	0.95[ASN][1000 genomes]
rs7548316	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58524400-58525800	Weak transcription	Fetal Brain Female	brain
2	chr1:58524600-58526800	Enhancers	Fetal Brain Male	brain
3	chr1:58525200-58526600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:58525200-58526800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr1:58525400-58525800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr1:58525400-58525800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr1:58525400-58525800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr1:58525400-58526400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:58525400-58526800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:58525600-58525800	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:58525600-58525800	Bivalent Enhancer	Brain Anterior Caudate	brain
12	chr1:58525600-58526000	Enhancers	H1 Cell Line	embryonic stem cell
13	chr1:58525600-58526200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:58525600-58526600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr1:58525600-58526800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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