Variant report

Variant	rs2807861
Chromosome Location	chr1:221062269-221062270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10495153	0.86[ASN][1000 genomes]
rs10495154	0.86[ASN][1000 genomes]
rs12565509	0.84[ASN][1000 genomes]
rs17009037	0.81[ASN][1000 genomes]
rs35014198	0.85[ASN][1000 genomes]
rs3820355	0.81[ASN][1000 genomes]
rs6541166	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6678259	0.87[ASN][1000 genomes]
rs73108353	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7519520	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv1798350	chr1:221020278-221069740	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221060000-221063600	Weak transcription	NHLF	lung
2	chr1:221061200-221062400	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:221061200-221064600	Weak transcription	Spleen	Spleen
4	chr1:221061400-221062400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
5	chr1:221061800-221062800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:221061800-221064600	Weak transcription	Pancreas	Pancrea
7	chr1:221062000-221065600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr1:221062200-221062400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
9	chr1:221062200-221066200	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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