Variant report

Variant	rs10495154
Chromosome Location	chr1:221075438-221075439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10495153	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11806418	0.88[EUR][1000 genomes]
rs11809417	0.88[EUR][1000 genomes]
rs12565509	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12566858	0.88[EUR][1000 genomes]
rs12567705	0.85[EUR][1000 genomes]
rs12568739	0.88[EUR][1000 genomes]
rs17009037	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17009060	0.85[EUR][1000 genomes]
rs17009078	0.88[EUR][1000 genomes]
rs2807861	0.86[ASN][1000 genomes]
rs35014198	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3820355	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6541166	1.00[ASN][1000 genomes]
rs6678259	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73108353	1.00[ASN][1000 genomes]
rs7418458	0.88[EUR][1000 genomes]
rs945447	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997685	chr1:220993527-221863416	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv535299	chr1:220993527-221863416	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:221069000-221079400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:221069200-221077400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:221074800-221076400	Weak transcription	Colon Smooth Muscle	Colon
4	chr1:221075000-221076000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr1:221075000-221076400	Enhancers	NHDF-Ad	bronchial
6	chr1:221075000-221076600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr1:221075000-221076800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:221075200-221076600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr1:221075400-221076800	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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