Variant report

Variant	rs2808027
Chromosome Location	chr1:220339479-220339480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220326525..220328727-chr1:220337325..220340076,2	K562	blood:
2	chr1:220338184..220341074-chr1:220346546..220348068,2	K562	blood:

Variant related genes	Relation type
ENSG00000118873	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10495145	1.00[CEU][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs11806086	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17007187	0.82[ASN][1000 genomes]
rs41303053	1.00[EUR][1000 genomes]
rs4492628	0.84[ASN][1000 genomes]
rs6541124	1.00[TSI][hapmap]
rs6669619	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6704420	1.00[CEU][hapmap]
rs7527410	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs893326	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220347000	Strong transcription	Dnd41	blood
2	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr1:220305600-220347600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:220305800-220347000	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr1:220306600-220346600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:220306600-220348200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:220308400-220339600	Weak transcription	Psoas Muscle	Psoas
8	chr1:220311200-220343400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:220312200-220347400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:220319000-220341400	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:220320400-220341800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:220323000-220341000	Strong transcription	HSMM	muscle
13	chr1:220323800-220348000	Strong transcription	Primary B cells from cord blood	blood
14	chr1:220324000-220347000	Strong transcription	HMEC	breast
15	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr1:220325400-220343800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr1:220325400-220347000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:220325400-220356000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr1:220328000-220339800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:220328000-220339800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:220328000-220339800	Weak transcription	Colonic Mucosa	Colon
22	chr1:220330200-220345000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:220330600-220339800	Weak transcription	Pancreas	Pancrea
24	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
25	chr1:220330800-220339600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr1:220330800-220339800	Weak transcription	Aorta	Aorta
27	chr1:220330800-220339800	Weak transcription	Esophagus	oesophagus
28	chr1:220330800-220339800	Weak transcription	Gastric	stomach
29	chr1:220330800-220340400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr1:220330800-220340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:220330800-220343800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:220330800-220344000	Weak transcription	Spleen	Spleen
33	chr1:220330800-220344200	Weak transcription	NHEK	skin
34	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:220331000-220339600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr1:220331000-220339600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr1:220331000-220339800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:220331200-220339600	Weak transcription	Brain Anterior Caudate	brain
39	chr1:220331400-220339800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr1:220331400-220339800	Weak transcription	Brain Germinal Matrix	brain
41	chr1:220331400-220339800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr1:220331400-220339800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr1:220331600-220339800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr1:220331600-220339800	Weak transcription	Thymus	Thymus
45	chr1:220331800-220339600	Weak transcription	Small Intestine	intestine
46	chr1:220331800-220347200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr1:220331800-220354000	Weak transcription	Right Ventricle	heart
48	chr1:220332200-220339800	Weak transcription	Ovary	ovary
49	chr1:220332200-220347200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr1:220332200-220352800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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