Variant report

Variant	rs6669619
Chromosome Location	chr1:220362447-220362448
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220362290..220363261-chr1:220949508..220950179,2	MCF-7	breast:
2	chr1:220348099..220349786-chr1:220360963..220363835,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10495145	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11806086	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs17007187	0.83[ASN][1000 genomes]
rs2808027	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs41303053	1.00[EUR][1000 genomes]
rs4492628	0.85[ASN][1000 genomes]
rs6704420	1.00[CEU][hapmap]
rs7527410	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs893326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:220330600-220363600	Weak transcription	Fetal Brain Male	brain
4	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:220341200-220364000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:220341200-220369200	Weak transcription	Fetal Heart	heart
7	chr1:220344800-220365600	Weak transcription	Brain Substantia Nigra	brain
8	chr1:220345400-220391400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:220346600-220363600	Weak transcription	Brain Angular Gyrus	brain
10	chr1:220348000-220386800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:220349600-220369600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:220349800-220362600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr1:220350000-220386200	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr1:220350600-220387800	Weak transcription	Stomach Mucosa	stomach
15	chr1:220350800-220365200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:220350800-220365200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:220350800-220365200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:220350800-220365200	Weak transcription	Fetal Brain Female	brain
19	chr1:220350800-220365200	Weak transcription	Spleen	Spleen
20	chr1:220350800-220366000	Weak transcription	Esophagus	oesophagus
21	chr1:220350800-220378800	Weak transcription	Pancreas	Pancrea
22	chr1:220353200-220386600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr1:220353800-220386400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr1:220354000-220368800	Strong transcription	Fetal Thymus	thymus
25	chr1:220354400-220375000	Strong transcription	GM12878-XiMat	blood
26	chr1:220354400-220386800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr1:220354600-220363600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr1:220354800-220363600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:220355000-220369600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:220355200-220364400	Weak transcription	Brain Anterior Caudate	brain
31	chr1:220355200-220364400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:220355200-220365000	Weak transcription	Brain Hippocampus Middle	brain
33	chr1:220355200-220371800	Weak transcription	Psoas Muscle	Psoas
34	chr1:220355200-220374000	Weak transcription	Brain Germinal Matrix	brain
35	chr1:220355400-220364400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr1:220355400-220364400	Weak transcription	Fetal Intestine Small	intestine
37	chr1:220355400-220374000	Weak transcription	Right Ventricle	heart
38	chr1:220355400-220378600	Weak transcription	Gastric	stomach
39	chr1:220355800-220363400	Weak transcription	NHLF	lung
40	chr1:220356000-220368400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:220356600-220365000	Weak transcription	HepG2	liver
42	chr1:220356800-220364400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:220357000-220364400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr1:220358000-220376000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr1:220358000-220381600	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr1:220358000-220382000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr1:220358200-220365800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr1:220358200-220368600	Strong transcription	Adipose Nuclei	Adipose
49	chr1:220358200-220369400	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr1:220358200-220369400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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