Variant report

Variant	rs2810914
Chromosome Location	chr9:98126554-98126555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1699499	1.00[AMR][1000 genomes]
rs600654	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98123400-98131000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:98123600-98127800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:98123600-98127800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:98123600-98128800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:98125200-98127000	Enhancers	Fetal Kidney	kidney
6	chr9:98125600-98129000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:98125600-98129200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:98125800-98127200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:98125800-98127400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:98125800-98127800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98126000-98127200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:98126000-98127200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:98126000-98127800	Weak transcription	Fetal Stomach	stomach
14	chr9:98126000-98131800	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:98126000-98132000	Weak transcription	HSMMtube	muscle
16	chr9:98126200-98127200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:98126200-98127600	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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