Variant report

Variant	rs600654
Chromosome Location	chr9:98081521-98081522
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
FANCC	TF binding region
ENSG00000185920	Chromatin interaction
ENSG00000271155	Chromatin interaction
ENSG00000158169	Chromatin interaction
ENSG00000237857	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1699499	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2810914	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98080400-98083200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:98080400-98083600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:98080600-98082200	Weak transcription	HepG2	liver
4	chr9:98080600-98082600	Weak transcription	Fetal Intestine Large	intestine
5	chr9:98080600-98083200	Weak transcription	Adipose Nuclei	Adipose
6	chr9:98080600-98083400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:98080600-98083600	Weak transcription	Fetal Lung	lung
8	chr9:98080600-98083600	Weak transcription	HMEC	breast
9	chr9:98080600-98083600	Weak transcription	NHEK	skin
10	chr9:98080600-98083800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr9:98080800-98083600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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