Variant report

Variant	rs2811873
Chromosome Location	chr1:59204383-59204384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59203533..59207535-chr1:59246122..59248670,4	K562	blood:
2	chr1:59200565..59206514-chr1:59243497..59250904,12	K562	blood:

Variant related genes	Relation type
ENSG00000234807	Chromatin interaction
ENSG00000177606	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2760490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2811891	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59198200-59206200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:59198600-59205800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:59198800-59207200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr1:59200400-59205800	Weak transcription	NHDF-Ad	bronchial
5	chr1:59201800-59204400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:59203400-59205800	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:59203800-59204400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:59204000-59204400	Bivalent Enhancer	HepG2	liver
9	chr1:59204000-59205200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:59204000-59205400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:59204000-59205400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:59204000-59205600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr1:59204000-59205600	Enhancers	HMEC	breast
14	chr1:59204000-59205600	Enhancers	NHEK	skin
15	chr1:59204000-59206200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr1:59204200-59204600	Enhancers	Right Atrium	heart
17	chr1:59204200-59205600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:59204200-59205800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:59204200-59205800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr1:59204200-59206000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links