Variant report

Variant	rs281584
Chromosome Location	chr2:133708674-133708675
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10198336	0.97[EUR][1000 genomes]
rs1036543	0.83[JPT][hapmap]
rs13011681	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1370602	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs1898563	0.84[CHB][hapmap];0.87[JPT][hapmap]
rs1898564	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs281574	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs281575	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs281576	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs281577	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs281578	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs281579	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs281580	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs281581	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs281583	0.87[CEU][hapmap];0.93[EUR][1000 genomes]
rs4953863	0.83[JPT][hapmap]
rs4954011	0.96[CHB][hapmap];0.86[ASN][1000 genomes]
rs7597826	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875137	chr2:133167263-133714142	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv583158	chr2:133316092-133862100	Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv875138	chr2:133410921-133761794	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv1002955	chr2:133440142-133743211	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1004604	chr2:133658116-133761794	Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv916805	chr2:133664765-133924973	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:133699200-133720600	Weak transcription	Fetal Lung	lung
2	chr2:133701600-133727000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:133701800-133710400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:133702200-133724400	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:133705600-133720600	Weak transcription	Fetal Stomach	stomach
6	chr2:133708000-133710400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr2:133708400-133709200	Enhancers	Fetal Brain Male	brain
8	chr2:133708400-133709800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr2:133708600-133709200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:133708600-133709200	Enhancers	NHEK	skin
11	chr2:133708600-133709400	Enhancers	Ovary	ovary
12	chr2:133708600-133709600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:133708600-133709600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:133708600-133709800	Enhancers	Fetal Kidney	kidney
15	chr2:133708600-133710200	Enhancers	Fetal Brain Female	brain
16	chr2:133708600-133710400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links