Variant report

Variant	rs2817241
Chromosome Location	chr6:24542263-24542264
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24541947..24545276-chr6:24695054..24697889,3	MCF-7	breast:
2	chr6:24531899..24534470-chr6:24539732..24542451,3	K562	blood:

Variant related genes	Relation type
ENSG00000112294	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12196913	0.91[ASN][1000 genomes]
rs2817239	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2817240	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34829630	0.90[ASN][1000 genomes]
rs62400513	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24509400-24545800	Weak transcription	Small Intestine	intestine
3	chr6:24532200-24545000	Weak transcription	K562	blood
4	chr6:24534800-24542400	Weak transcription	Fetal Kidney	kidney
5	chr6:24535000-24546200	Weak transcription	Pancreas	Pancrea
6	chr6:24535000-24547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
8	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
9	chr6:24535400-24550000	Weak transcription	Gastric	stomach
10	chr6:24535600-24542400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:24535600-24542400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:24535600-24543400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr6:24535600-24544000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:24535600-24546000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:24535600-24546800	Weak transcription	Dnd41	blood
16	chr6:24535600-24547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
18	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
20	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:24536000-24543800	Weak transcription	Primary T cells from cord blood	blood
22	chr6:24537000-24545400	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:24537000-24546200	Weak transcription	Fetal Heart	heart
24	chr6:24538200-24544200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:24538200-24544600	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:24538200-24545800	Weak transcription	Aorta	Aorta
27	chr6:24538200-24546000	Weak transcription	HepG2	liver
28	chr6:24538200-24547400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:24538400-24547400	Weak transcription	Primary B cells from peripheral blood	blood
30	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
31	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
32	chr6:24540400-24543800	Weak transcription	Left Ventricle	heart
33	chr6:24540800-24542400	Weak transcription	Primary B cells from cord blood	blood
34	chr6:24540800-24546400	Weak transcription	Liver	Liver
35	chr6:24540800-24547400	Weak transcription	Fetal Thymus	thymus
36	chr6:24540800-24547400	Weak transcription	Thymus	Thymus
37	chr6:24540800-24547600	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links