Variant report

Variant	rs34829630
Chromosome Location	chr6:24547650-24547651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10456306	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196913	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12199955	0.83[ASN][1000 genomes]
rs12211030	0.83[ASN][1000 genomes]
rs2817239	0.89[ASN][1000 genomes]
rs2817240	0.90[ASN][1000 genomes]
rs2817241	0.90[ASN][1000 genomes]
rs34505453	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3903801	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62400513	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34020	chr6:24481299-24606036	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24496200-24583000	Weak transcription	Hela-S3	cervix
2	chr6:24535200-24566600	Weak transcription	Brain Germinal Matrix	brain
3	chr6:24535200-24591200	Weak transcription	Fetal Brain Male	brain
4	chr6:24535400-24550000	Weak transcription	Gastric	stomach
5	chr6:24535600-24560600	Weak transcription	Brain Anterior Caudate	brain
6	chr6:24535600-24560600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:24535600-24563200	Weak transcription	Brain Angular Gyrus	brain
8	chr6:24535600-24583400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:24539200-24583200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:24540200-24556200	Weak transcription	Fetal Brain Female	brain
11	chr6:24546200-24548400	Enhancers	Fetal Heart	heart
12	chr6:24546800-24548000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:24547000-24548000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr6:24547400-24547800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:24547400-24547800	Enhancers	Primary T cells from cord blood	blood
16	chr6:24547400-24547800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:24547400-24547800	Enhancers	Primary T helper cells fromperipheralblood	blood
18	chr6:24547400-24547800	Bivalent Enhancer	HepG2	liver
19	chr6:24547400-24548000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:24547400-24548000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:24547400-24548000	Enhancers	Primary B cells from peripheral blood	blood
22	chr6:24547400-24548000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:24547400-24548000	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr6:24547400-24548200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr6:24547400-24548200	Enhancers	Fetal Thymus	thymus
26	chr6:24547400-24548200	Flanking Active TSS	Dnd41	blood
27	chr6:24547600-24547800	Enhancers	Fetal Stomach	stomach
28	chr6:24547600-24548000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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