Variant report

Variant	rs2817689
Chromosome Location	chr10:98857923-98857924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98857228..98859205-chr10:98862537..98865194,2	MCF-7	breast:
2	chr10:98852925..98854951-chr10:98856338..98858099,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1490689	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1490690	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1490691	0.85[CEU][hapmap];0.87[CHD][hapmap];0.94[GIH][hapmap];0.83[JPT][hapmap];0.81[LWK][hapmap];0.82[MKK][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2006739	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2636776	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2636784	0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs2636786	0.86[EUR][1000 genomes]
rs2636787	0.86[EUR][1000 genomes]
rs2636813	0.82[EUR][1000 genomes]
rs2636817	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs2784938	0.82[EUR][1000 genomes]
rs2817690	0.81[EUR][1000 genomes]
rs2817691	0.92[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.97[LWK][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2817693	0.81[CEU][hapmap];0.87[CHD][hapmap];0.91[GIH][hapmap];0.83[JPT][hapmap];0.80[MKK][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2817694	0.97[LWK][hapmap];0.90[TSI][hapmap];0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2817701	0.84[TSI][hapmap];0.86[EUR][1000 genomes]
rs2817703	0.82[EUR][1000 genomes]
rs3000213	0.86[EUR][1000 genomes]
rs902473	0.82[EUR][1000 genomes]
rs902474	0.82[TSI][hapmap];0.82[EUR][1000 genomes]
rs902475	0.81[CEU][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs931451	0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1039568	chr10:98800844-98868329	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv895913	chr10:98854410-98884402	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98841200-98869200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:98847400-98860600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:98853200-98858200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:98854200-98859400	Enhancers	Fetal Heart	heart
5	chr10:98855000-98858400	Enhancers	Fetal Brain Male	brain
6	chr10:98855000-98858600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:98855200-98858800	Enhancers	Right Ventricle	heart
8	chr10:98855800-98858200	Weak transcription	Gastric	stomach
9	chr10:98856200-98860400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr10:98856200-98860400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:98856200-98860600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr10:98856400-98858000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr10:98856400-98860400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:98856600-98860600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:98857000-98858200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:98857000-98858600	Enhancers	Brain Germinal Matrix	brain
17	chr10:98857000-98858600	Enhancers	Fetal Brain Female	brain
18	chr10:98857000-98862400	Weak transcription	Right Atrium	heart
19	chr10:98857000-98862600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:98857000-98869200	Weak transcription	Thymus	Thymus
21	chr10:98857200-98858800	Genic enhancers	Fetal Thymus	thymus
22	chr10:98857200-98859000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr10:98857200-98860600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:98857200-98862600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr10:98857200-98869000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:98857400-98863200	Weak transcription	Brain Anterior Caudate	brain
27	chr10:98857800-98858200	Enhancers	Left Ventricle	heart

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