Variant report

Variant	rs2636813
Chromosome Location	chr10:98877759-98877760
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98832441..98833621-chr10:98876782..98877820,10	MCF-7	breast:
2	chr10:98876999..98877834-chr10:98994252..98994779,2	MCF-7	breast:
3	chr10:98832792..98833549-chr10:98877399..98877991,2	K562	blood:
4	chr10:98877113..98877837-chr10:98970293..98970909,2	MCF-7	breast:
5	chr10:98796702..98797781-chr10:98876858..98877776,6	MCF-7	breast:
6	chr10:98875421..98877829-chr10:98897126..98899763,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1336259	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1490689	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1490690	0.83[EUR][1000 genomes]
rs1490691	0.86[EUR][1000 genomes]
rs2006739	0.83[EUR][1000 genomes]
rs2484879	0.86[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2636776	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2636784	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636786	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636787	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2636817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2784938	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2817689	0.82[EUR][1000 genomes]
rs2817690	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs2817693	0.82[EUR][1000 genomes]
rs2817694	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2817701	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817703	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817704	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2817705	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2817707	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2817709	0.85[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2817711	0.81[EUR][1000 genomes]
rs3000213	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs902473	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs902474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs902475	0.82[CHB][hapmap];0.83[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs931451	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv895913	chr10:98854410-98884402	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98870200-98879800	Weak transcription	Thymus	Thymus
2	chr10:98870200-98887800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:98872200-98877800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
5	chr10:98876600-98878800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:98876600-98879200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:98876800-98878000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:98876800-98879000	Weak transcription	Brain Germinal Matrix	brain
9	chr10:98877000-98878800	Weak transcription	Fetal Brain Male	brain
10	chr10:98877200-98878800	Weak transcription	Fetal Brain Female	brain
11	chr10:98877400-98879800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:98877600-98877800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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