Variant report

Variant	rs1336259
Chromosome Location	chr10:98884313-98884314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98882941..98884607-chr10:98892301..98894138,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1490689	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1490691	0.82[EUR][1000 genomes]
rs2484879	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2636776	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2636784	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2636786	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2636787	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636813	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2636817	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2784938	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2817690	0.81[EUR][1000 genomes]
rs2817694	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2817701	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2817703	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817704	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2817705	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2817707	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2817709	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3000213	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs902473	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902474	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs902475	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs931451	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv895913	chr10:98854410-98884402	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98870200-98887800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
3	chr10:98879600-98887600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
5	chr10:98880400-98891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:98882400-98889400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:98883000-98884800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:98883400-98884800	Enhancers	Fetal Brain Male	brain
9	chr10:98883400-98885200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:98883600-98884800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:98884000-98884400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
12	chr10:98884000-98884600	Genic enhancers	Brain Germinal Matrix	brain
13	chr10:98884200-98884600	Enhancers	Fetal Brain Female	brain

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