Variant report

Variant	rs2817705
Chromosome Location	chr10:98887529-98887530
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98886302..98888619-chr10:98915169..98916760,2	K562	blood:
2	chr10:98880505..98883448-chr10:98886169..98887712,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269891	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1336259	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1490689	0.82[EUR][1000 genomes]
rs2484879	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636774	0.81[EUR][1000 genomes]
rs2636776	0.82[EUR][1000 genomes]
rs2636784	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636786	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2636787	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2636813	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2636817	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2784938	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2817647	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2817694	0.81[EUR][1000 genomes]
rs2817701	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2817703	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2817704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2817707	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2817709	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2817710	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2817711	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2817713	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3000213	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs902473	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs902474	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs902475	0.83[EUR][1000 genomes]
rs931451	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98870200-98887800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
3	chr10:98879600-98887600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
5	chr10:98880400-98891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:98882400-98889400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:98887000-98888800	Genic enhancers	Fetal Brain Female	brain
8	chr10:98887200-98887600	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:98887200-98891400	Enhancers	Brain Angular Gyrus	brain
10	chr10:98887200-98892800	Enhancers	Brain Germinal Matrix	brain
11	chr10:98887200-98895000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:98887400-98887600	Bivalent Enhancer	K562	blood
13	chr10:98887400-98889600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:98887400-98892200	Enhancers	Fetal Brain Male	brain
15	chr10:98887400-98894200	Enhancers	Cortex derived primary cultured neurospheres	brain

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