Variant report

Variant	rs2817710
Chromosome Location	chr10:98892871-98892872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98882941..98884607-chr10:98892301..98894138,2	K562	blood:
2	chr10:98891626..98893262-chr10:98910638..98912795,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2484879	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2636774	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2817647	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2817704	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2817705	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2817707	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2817709	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2817711	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2817713	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs875483	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs875484	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs902469	0.83[ASN][1000 genomes]
rs902475	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
2	chr10:98887200-98895000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:98887400-98894200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr10:98888600-98893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:98888800-98893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:98888800-98894600	Weak transcription	Fetal Brain Female	brain
7	chr10:98890600-98897800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr10:98891400-98893800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:98891400-98893800	Weak transcription	Brain Angular Gyrus	brain
10	chr10:98892000-98898600	Weak transcription	Brain Anterior Caudate	brain
11	chr10:98892000-98899600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:98892200-98899800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr10:98892200-98899800	Strong transcription	Fetal Thymus	thymus
14	chr10:98892400-98898000	Weak transcription	Fetal Muscle Leg	muscle
15	chr10:98892400-98898800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr10:98892400-98911400	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:98892600-98893600	Weak transcription	Fetal Lung	lung
18	chr10:98892600-98896800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:98892800-98893200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr10:98892800-98893600	Weak transcription	Brain Germinal Matrix	brain
21	chr10:98892800-98893800	Weak transcription	Fetal Brain Male	brain

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