Variant report

Variant	rs2817647
Chromosome Location	chr10:98897237-98897238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98875421..98877829-chr10:98897126..98899763,2	K562	blood:
2	chr10:98895047..98897356-chr10:98912806..98914743,2	K562	blood:
3	chr10:98889238..98892726-chr10:98895337..98898197,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2484879	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2636774	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636817	1.00[YRI][hapmap]
rs2817701	1.00[YRI][hapmap]
rs2817704	0.80[AMR][1000 genomes]
rs2817705	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2817707	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2817709	0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2817710	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2817711	0.91[CEU][hapmap];0.80[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2817713	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs875483	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs875484	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs902469	0.80[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs902474	0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
2	chr10:98890600-98897800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:98892000-98898600	Weak transcription	Brain Anterior Caudate	brain
4	chr10:98892000-98899600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:98892200-98899800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr10:98892200-98899800	Strong transcription	Fetal Thymus	thymus
7	chr10:98892400-98898000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:98892400-98898800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr10:98892400-98911400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr10:98894200-98897400	Weak transcription	Fetal Brain Male	brain
11	chr10:98894400-98899600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:98894800-98899600	Enhancers	HepG2	liver
13	chr10:98895000-98898200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr10:98895200-98898000	Weak transcription	Fetal Lung	lung
15	chr10:98895400-98898400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:98895400-98898600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:98895400-98898800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:98895400-98899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr10:98895600-98899600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr10:98895600-98899600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr10:98895600-98899600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:98895800-98897800	Weak transcription	Brain Germinal Matrix	brain
23	chr10:98895800-98898000	Weak transcription	Fetal Brain Female	brain
24	chr10:98895800-98898400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr10:98896800-98898000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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