Variant report

Variant	rs902469
Chromosome Location	chr10:98899114-98899115
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98875421..98877829-chr10:98897126..98899763,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2484879	0.84[JPT][hapmap]
rs2636774	0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2817647	0.80[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs2817709	0.83[JPT][hapmap]
rs2817710	0.83[ASN][1000 genomes]
rs2817711	0.84[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2817713	0.80[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs875483	0.87[ASN][1000 genomes]
rs875484	0.87[ASN][1000 genomes]
rs902475	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs902469	C10orf131	cis	cerebellum	SCAN
rs902469	MRPL43	cis	parietal	SCAN
rs902469	DHDPSL	cis	parietal	SCAN

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
2	chr10:98892000-98899600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:98892200-98899800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:98892200-98899800	Strong transcription	Fetal Thymus	thymus
5	chr10:98892400-98911400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:98894400-98899600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:98894800-98899600	Enhancers	HepG2	liver
8	chr10:98895400-98899600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr10:98895600-98899600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr10:98895600-98899600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr10:98895600-98899600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:98897400-98901200	Enhancers	Fetal Brain Male	brain
13	chr10:98897800-98899400	Bivalent Enhancer	Fetal Heart	heart
14	chr10:98897800-98900200	Enhancers	Brain Germinal Matrix	brain
15	chr10:98898000-98900400	Enhancers	Fetal Brain Female	brain
16	chr10:98898000-98901400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:98898000-98901400	Enhancers	Fetal Lung	lung
18	chr10:98898200-98900800	Weak transcription	Right Ventricle	heart
19	chr10:98898200-98901400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr10:98898200-98901800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr10:98898400-98900200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:98898600-98900200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr10:98898600-98900800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:98898600-98901000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr10:98898800-98899200	Weak transcription	Brain Anterior Caudate	brain
26	chr10:98898800-98901000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr10:98899000-98899200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
28	chr10:98899000-98899400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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