Variant report

Variant	rs2817707
Chromosome Location	chr10:98889418-98889419
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98889238..98892726-chr10:98895337..98898197,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1336259	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2484879	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2636774	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2636784	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2636786	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2636787	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2636813	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2636817	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2784938	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2817647	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2817701	0.86[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2817703	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2817704	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2817705	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2817709	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2817710	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2817711	0.82[EUR][1000 genomes]
rs2817713	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3000213	0.83[ASN][1000 genomes]
rs875483	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs875484	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs902473	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs902474	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98873600-98890000	Strong transcription	Fetal Thymus	thymus
2	chr10:98880200-98912800	Weak transcription	Thymus	Thymus
3	chr10:98880400-98891600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:98887200-98891400	Enhancers	Brain Angular Gyrus	brain
5	chr10:98887200-98892800	Enhancers	Brain Germinal Matrix	brain
6	chr10:98887200-98895000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr10:98887400-98889600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:98887400-98892200	Enhancers	Fetal Brain Male	brain
9	chr10:98887400-98894200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr10:98887600-98889800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:98887800-98889800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:98888400-98890800	Weak transcription	Lung	lung
13	chr10:98888600-98890000	Weak transcription	Brain Anterior Caudate	brain
14	chr10:98888600-98890800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr10:98888600-98892600	Enhancers	Fetal Lung	lung
16	chr10:98888600-98893800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:98888800-98892600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:98888800-98893600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:98888800-98894600	Weak transcription	Fetal Brain Female	brain
20	chr10:98889000-98892400	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:98889400-98889800	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr10:98889400-98889800	Enhancers	Right Ventricle	heart
23	chr10:98889400-98890000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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