Variant report

Variant	rs2817695
Chromosome Location	chr10:98869388-98869389
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98865480..98867358-chr10:98868311..98871144,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12782356	0.83[CEU][hapmap]
rs2451766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636777	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2636781	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2636782	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2636783	0.84[CHB][hapmap];0.86[JPT][hapmap]
rs2636785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636788	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2636789	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636814	0.94[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636815	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636816	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2817692	0.94[CEU][hapmap];0.87[YRI][hapmap];0.85[AFR][1000 genomes]
rs2817696	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2817697	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817698	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs2817699	0.81[ASN][1000 genomes]
rs2817700	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2817702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895913	chr10:98854410-98884402	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98863200-98876200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:98863400-98870000	Weak transcription	Brain Anterior Caudate	brain
3	chr10:98867000-98869400	Weak transcription	Right Ventricle	heart
4	chr10:98867400-98871000	Enhancers	Fetal Thymus	thymus
5	chr10:98869000-98869400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr10:98869000-98869400	Bivalent Enhancer	Fetal Stomach	stomach
7	chr10:98869000-98869600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:98869000-98869800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:98869000-98870200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr10:98869000-98870200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:98869000-98872200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:98869000-98872400	Enhancers	Fetal Brain Female	brain
13	chr10:98869000-98872800	Enhancers	Fetal Brain Male	brain
14	chr10:98869200-98869400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:98869200-98869400	Enhancers	Brain Angular Gyrus	brain
16	chr10:98869200-98869400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr10:98869200-98869400	Enhancers	Brain Substantia Nigra	brain
18	chr10:98869200-98869600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr10:98869200-98869800	Enhancers	H9 Cell Line	embryonic stem cell
20	chr10:98869200-98869800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr10:98869200-98869800	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:98869200-98869800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:98869200-98870000	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr10:98869200-98870200	Active TSS	Stomach Smooth Muscle	stomach
25	chr10:98869200-98870200	Enhancers	Thymus	Thymus

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