Variant report

Variant	rs2817700
Chromosome Location	chr10:98873593-98873594
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2172038	0.89[ASN][1000 genomes]
rs2451766	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2493329	0.89[ASN][1000 genomes]
rs2636777	0.83[ASN][1000 genomes]
rs2636778	0.89[ASN][1000 genomes]
rs2636782	0.89[ASN][1000 genomes]
rs2636783	0.89[ASN][1000 genomes]
rs2636785	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2636789	0.82[ASN][1000 genomes]
rs2636814	0.82[ASN][1000 genomes]
rs2636815	0.82[ASN][1000 genomes]
rs2817695	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2817697	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2817698	0.89[ASN][1000 genomes]
rs2817699	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2817702	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3000214	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv895913	chr10:98854410-98884402	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98863200-98876200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:98870200-98879800	Weak transcription	Thymus	Thymus
3	chr10:98870200-98887800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr10:98871000-98873600	Weak transcription	Fetal Thymus	thymus
5	chr10:98872200-98877800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:98872400-98875800	Weak transcription	Fetal Brain Female	brain
7	chr10:98872800-98875800	Weak transcription	Fetal Brain Male	brain
8	chr10:98873200-98873600	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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