Variant report

Variant	rs2817732
Chromosome Location	chr6:24789268-24789269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12214068	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1555430	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2064976	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2145752	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2754776	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2754777	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817728	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817739	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830609	chr6:24712086-24896647	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	nsv428474	chr6:24714157-24797977	Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
5	nsv5227	chr6:24774149-24824012	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	nsv508396	chr6:24779648-24846309	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24776400-24803200	Weak transcription	HSMMtube	muscle
2	chr6:24776400-24807400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr6:24776800-24790600	Weak transcription	Right Ventricle	heart
4	chr6:24776800-24807600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:24777000-24790800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr6:24777000-24791000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:24777000-24791000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:24777000-24797000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr6:24777000-24801200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:24777000-24802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:24777000-24805000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:24777000-24806200	Weak transcription	Spleen	Spleen
13	chr6:24777000-24808000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:24777000-24809400	Weak transcription	Brain Germinal Matrix	brain
15	chr6:24777000-24811600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:24777000-24847600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:24777000-24859600	Weak transcription	Psoas Muscle	Psoas
18	chr6:24777200-24790600	Weak transcription	Fetal Kidney	kidney
19	chr6:24777200-24791000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:24777200-24802400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:24777200-24802400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr6:24777600-24802400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:24777800-24789400	Strong transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:24777800-24790200	Weak transcription	Brain Angular Gyrus	brain
25	chr6:24778000-24789400	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:24778400-24791400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:24779200-24789400	Weak transcription	Stomach Mucosa	stomach
28	chr6:24779200-24789600	Strong transcription	Fetal Thymus	thymus
29	chr6:24779200-24791000	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr6:24779800-24789400	Strong transcription	Primary hematopoietic stem cells	blood
31	chr6:24781000-24802400	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr6:24781200-24789400	Strong transcription	Dnd41	blood
33	chr6:24781800-24789400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr6:24782200-24797800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:24782400-24789400	Weak transcription	Lung	lung
36	chr6:24782400-24795200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:24782400-24803000	Weak transcription	Pancreas	Pancrea
38	chr6:24783400-24802000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:24783600-24802400	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:24784000-24790000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr6:24784400-24789400	Strong transcription	A549	lung
42	chr6:24785000-24801200	Weak transcription	Primary B cells from peripheral blood	blood
43	chr6:24785000-24802000	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr6:24785800-24790400	Strong transcription	Primary B cells from cord blood	blood
45	chr6:24786000-24789400	Strong transcription	Fetal Muscle Trunk	muscle
46	chr6:24786400-24789600	Strong transcription	Primary T cells from cord blood	blood
47	chr6:24786400-24791600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:24786400-24798000	Weak transcription	Brain Anterior Caudate	brain
49	chr6:24786400-24799800	Weak transcription	Osteobl	bone
50	chr6:24786600-24799600	Weak transcription	Hela-S3	cervix

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