Variant report

Variant	rs2818753
Chromosome Location	chr1:217113227-217113228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:217113226-217113276	HL-60	blood:	n/a
2	chr1:217113226-217113276	GM12878	blood:	n/a
3	chr1:217113226-217113276	K562	blood:	n/a
4	chr1:217113226-217113276	HCPEpiC	choroid plexus:	n/a
5	chr1:217113226-217113276	NT2-D1	testis:	n/a
6	chr1:217113226-217113276	GM12891	blood:	n/a
7	chr1:217113226-217113276	HIPEpiC	eye:	n/a
8	chr1:217113226-217113276	ProgFib	skin:	n/a
9	chr1:217113226-217113276	H1-hESC	embryonic stem cell:	embryo
10	chr1:217113226-217113276	NHBE	bronchial:	n/a
11	chr1:217113226-217113276	HNPCEpiC	eye:	n/a
12	chr1:217113226-217113276	Jurkat	blood:	n/a
13	chr1:217113226-217113276	BE2_C	brain:	n/a
14	chr1:217113226-217113276	Hepatocyte	liver:	n/a
15	chr1:217113226-217113276	PrEC	prostate:	n/a
16	chr1:217113226-217113276	A549	lung:	n/a
17	chr1:217113226-217113276	GM06990	blood:	n/a
18	chr1:217113226-217113276	AG09319	gingival:	n/a
19	chr1:217113226-217113276	BJ	skin:	n/a
20	chr1:217113226-217113276	AG09309	skin:	n/a
21	chr1:217113226-217113276	HRE	kidney:	n/a
22	chr1:217113226-217113276	AG04450	lung:	fetal
23	chr1:217113226-217113276	HRCEpiC	kidney:	n/a
24	chr1:217113226-217113276	NH-A	brain:	n/a
25	chr1:217113226-217113276	HCM	heart:	n/a
26	chr1:217113226-217113276	SK-N-MC	brain:	n/a
27	chr1:217113226-217113276	HCF	heart:	n/a
28	chr1:217113226-217113276	SAEC	small airway:	n/a
29	chr1:217113226-217113276	RPTEC	kidney:	n/a
30	chr1:217113226-217113276	HPAEpiC	pulmonary alveolar:	n/a
31	chr1:217113226-217113276	HEEpiC	esophagus:	n/a
32	chr1:217113226-217113276	PANC-1	pancreas:	n/a
33	chr1:217113226-217113276	ovcar-3	ovarian:	n/a
34	chr1:217113226-217113276	LNCaP	prostate:	n/a
35	chr1:217113226-217113276	CMK	blood:	n/a
36	chr1:217113226-217113276	Hela-S3	cervix:	n/a
37	chr1:217113226-217113276	IMR90	lung:	fetal
38	chr1:217113226-217113276	SK-N-SH_RA	brain:	n/a
39	chr1:217113226-217113276	HEK293	kidney:	embryo
40	chr1:217113226-217113276	AG10803	skin:	n/a
41	chr1:217113226-217113276	HRPEpiC	eye:	n/a
42	chr1:217113226-217113276	T-47D	breast:	n/a
43	chr1:217113226-217113276	GM19239	blood:	n/a
44	chr1:217113226-217113276	MCF-7	breast:	n/a
45	chr1:217113226-217113276	HMEC	breast:	n/a
46	chr1:217113226-217113276	U87	brain:	n/a
47	chr1:217113226-217113276	HAEpiC	amniotic membrane:	n/a
48	chr1:217113226-217113276	ECC-1	luminal epithelium:	n/a
49	chr1:217113226-217113276	NB4	blood:	n/a
50	chr1:217113226-217113276	SKMC	muscle:	n/a

No data

Variant related genes	Relation type
ESRRG	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1030844	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572445	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12075147	1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1370151	1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2576272	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:217109600-217113800	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:217109600-217114400	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr1:217111000-217125400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr1:217111200-217113800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr1:217111200-217118000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:217112000-217117600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr1:217112200-217117800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:217112400-217117800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:217112800-217113400	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:217113000-217117000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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