Variant report
| Variant | rs2822652 |
|---|---|
| Chromosome Location | chr21:15764212-15764213 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:15753622..15756331-chr21:15761576..15764249,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000155304 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1040330 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs12479 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs13048179 | 0.92[ASN][1000 genomes] |
| rs13048477 | 0.91[ASN][1000 genomes] |
| rs2037941 | 0.91[ASN][1000 genomes] |
| rs2822624 | 0.85[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2822629 | 0.90[ASN][1000 genomes] |
| rs2822631 | 0.92[ASN][1000 genomes] |
| rs2822632 | 0.92[ASN][1000 genomes] |
| rs2822636 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2822638 | 0.86[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2822642 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs2822644 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2822649 | 0.83[CEU][hapmap];0.87[JPT][hapmap] |
| rs2822650 | 0.83[CEU][hapmap];0.87[JPT][hapmap] |
| rs2822655 | 0.84[ASN][1000 genomes] |
| rs2822661 | 0.82[JPT][hapmap] |
| rs2822662 | 1.00[JPT][hapmap] |
| rs7276170 | 0.93[ASN][1000 genomes] |
| rs7282521 | 0.91[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs9305301 | 0.81[ASN][1000 genomes] |
| rs9974630 | 0.86[ASN][1000 genomes] |
| rs9978374 | 0.84[ASN][1000 genomes] |
| rs9982492 | 0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1064554 | chr21:15676222-15809321 | Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1061686 | chr21:15724570-15765777 | Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv913403 | chr21:15743387-15786271 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
