Variant report
| Variant | rs9978374 |
|---|---|
| Chromosome Location | chr21:15819721-15819722 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:15818489..15820512-chr21:15822543..15824167,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1040330 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12479 | 0.91[JPT][hapmap] |
| rs13048179 | 0.81[ASN][1000 genomes] |
| rs2037941 | 0.80[ASN][1000 genomes] |
| rs2822624 | 0.82[ASN][1000 genomes] |
| rs2822631 | 0.81[ASN][1000 genomes] |
| rs2822632 | 0.81[ASN][1000 genomes] |
| rs2822636 | 0.91[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2822638 | 0.82[JPT][hapmap] |
| rs2822642 | 0.91[JPT][hapmap] |
| rs2822644 | 0.91[JPT][hapmap] |
| rs2822652 | 0.86[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs2822662 | 0.91[JPT][hapmap] |
| rs7282521 | 0.91[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs7283911 | 0.84[ASN][1000 genomes] |
| rs9974630 | 0.84[ASN][1000 genomes] |
| rs9982492 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063703 | chr21:15777995-15882121 | Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv544375 | chr21:15777995-15882121 | Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv966029 | chr21:15818808-15833739 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:15819000-15822400 | Weak transcription | K562 | blood |
