Variant report

Variant	rs2822689
Chromosome Location	chr21:15854413-15854414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15852372..15854683-chr21:15916871..15919423,2	K562	blood:

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2822685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2822687	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs62227160	0.85[ASN][1000 genomes]
rs723856	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9981837	0.87[ASN][1000 genomes]
rs9984230	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15847800-15874800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:15849200-15854600	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr21:15851000-15854800	Enhancers	Fetal Brain Male	brain
4	chr21:15851600-15856400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr21:15851800-15855800	Enhancers	K562	blood
6	chr21:15852400-15860400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr21:15852600-15855600	Enhancers	Primary hematopoietic stem cells	blood
8	chr21:15853200-15885800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr21:15853400-15854800	Enhancers	Primary B cells from peripheral blood	blood
10	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
11	chr21:15853600-15855800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr21:15854000-15854600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr21:15854000-15854600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr21:15854000-15854600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr21:15854000-15854600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr21:15854000-15854600	Enhancers	Brain Substantia Nigra	brain
17	chr21:15854000-15854600	Enhancers	Fetal Thymus	thymus
18	chr21:15854000-15854600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr21:15854000-15855600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr21:15854000-15855800	Enhancers	Dnd41	blood
21	chr21:15854200-15854600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr21:15854200-15854600	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr21:15854200-15854600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr21:15854200-15854600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr21:15854200-15854800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr21:15854200-15855800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr21:15854200-15857400	ZNF genes & repeats	GM12878-XiMat	blood
28	chr21:15854400-15854600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
29	chr21:15854400-15854800	Flanking Active TSS	Primary T cells from cord blood	blood
30	chr21:15854400-15854800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr21:15854400-15854800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr21:15854400-15854800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr21:15854400-15854800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links