Variant report

Variant	rs2822705
Chromosome Location	chr21:15868095-15868096
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15844220..15846274-chr21:15867274..15869149,2	K562	blood:
2	chr21:15867966..15869641-chr21:15871722..15874223,2	K562	blood:
3	chr21:15860666..15863786-chr21:15866829..15869063,4	K562	blood:
4	chr21:15858969..15860796-chr21:15865823..15868637,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155307	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17003324	1.00[CEU][hapmap]
rs2822704	0.91[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67163592	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063703	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv544375	chr21:15777995-15882121	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv523557	chr21:15862491-15870171	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15847800-15874800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:15853200-15885800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr21:15853400-15905400	Weak transcription	HUVEC	blood vessel
4	chr21:15854600-15868600	Weak transcription	Fetal Thymus	thymus
5	chr21:15854800-15875600	Weak transcription	Thymus	Thymus
6	chr21:15855400-15869000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr21:15855400-15871000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr21:15856200-15875400	Weak transcription	Spleen	Spleen
9	chr21:15857200-15882600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr21:15861400-15874800	Weak transcription	Small Intestine	intestine
11	chr21:15861600-15881000	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr21:15862600-15870600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr21:15862600-15889400	Strong transcription	Dnd41	blood
14	chr21:15863200-15870600	Strong transcription	Primary T cells from cord blood	blood
15	chr21:15864000-15868800	Weak transcription	Primary B cells from cord blood	blood
16	chr21:15864800-15878400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr21:15864800-15881600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr21:15865000-15878600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr21:15865600-15868400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr21:15865600-15870200	Weak transcription	Gastric	stomach
21	chr21:15865600-15871200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr21:15866200-15874800	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr21:15866200-15876800	Strong transcription	Primary T cells fromperipheralblood	blood
24	chr21:15866800-15868600	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr21:15866800-15871400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr21:15866800-15871800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr21:15866800-15877800	Strong transcription	Primary T helper cells PMA-I stimulated	--
28	chr21:15867000-15870200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr21:15867000-15874000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr21:15867000-15877400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr21:15867000-15890600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr21:15867200-15871400	Strong transcription	Primary hematopoietic stem cells	blood
33	chr21:15867200-15876800	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr21:15867600-15871200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr21:15867600-15872000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr21:15867600-15875600	Strong transcription	GM12878-XiMat	blood
37	chr21:15867800-15869400	Genic enhancers	K562	blood

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