Variant report

Variant	rs2823058
Chromosome Location	chr21:16476649-16476650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1003428	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1556286	0.83[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2150370	0.85[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2823041	0.85[EUR][1000 genomes]
rs2823047	0.86[EUR][1000 genomes]
rs2823051	0.86[EUR][1000 genomes]
rs2823052	0.97[EUR][1000 genomes]
rs2823054	0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs2823056	0.83[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs35426920	0.86[EUR][1000 genomes]
rs55666326	0.96[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs62218162	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv521517	chr21:16474158-16482643	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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