Variant report

Variant	rs1556286
Chromosome Location	chr21:16474158-16474159
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1003427	1.00[CEU][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1005526	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1022450	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2150369	0.92[EUR][1000 genomes]
rs2403877	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2823040	0.92[CEU][hapmap];0.85[TSI][hapmap];0.80[EUR][1000 genomes]
rs2823042	0.85[CEU][hapmap];0.85[TSI][hapmap]
rs2823049	0.85[EUR][1000 genomes]
rs2823054	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2823056	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823058	0.83[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs2823061	0.92[CEU][hapmap]
rs2823062	0.87[CEU][hapmap]
rs719112	0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7282412	0.92[CEU][hapmap]
rs760404	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9977308	0.87[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv521517	chr21:16474158-16482643	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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