Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1003427	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs1003428	0.92[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1005526	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1022450	0.94[EUR][1000 genomes]
rs1556286	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2150369	0.94[EUR][1000 genomes]
rs2150370	0.99[ASN][1000 genomes]
rs2403877	0.95[EUR][1000 genomes]
rs2823041	0.82[CHB][hapmap]
rs2823042	0.85[CEU][hapmap]
rs2823047	0.82[ASN][1000 genomes]
rs2823049	0.85[EUR][1000 genomes]
rs2823051	0.80[ASN][1000 genomes]
rs2823052	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2823054	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2823056	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55666326	0.97[ASN][1000 genomes]
rs62218162	0.99[ASN][1000 genomes]
rs719112	0.93[EUR][1000 genomes]
rs9977308	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16466400-16468400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr21:16466400-16469400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16466600-16467600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr21:16466800-16467200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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