Variant report

Variant	rs2403877
Chromosome Location	chr21:16468080-16468081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1003427	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1005526	0.95[EUR][1000 genomes]
rs1022450	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556286	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs2150369	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2823040	0.82[EUR][1000 genomes]
rs2823046	0.93[ASN][1000 genomes]
rs2823049	0.87[EUR][1000 genomes]
rs2823054	0.86[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2823056	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs2823061	0.82[EUR][1000 genomes]
rs4817650	0.83[EUR][1000 genomes]
rs719112	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs760404	0.95[EUR][1000 genomes]
rs9977308	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16466400-16468400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr21:16466400-16469400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16467200-16468800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr21:16467400-16468400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr21:16467600-16469400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr21:16467800-16468400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr21:16467800-16468400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr21:16467800-16468800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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