Variant report

Variant	rs2150369
Chromosome Location	chr21:16470534-16470535
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1003427	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1005526	0.94[EUR][1000 genomes]
rs1022450	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1556286	0.92[EUR][1000 genomes]
rs2026849	0.80[EUR][1000 genomes]
rs2403877	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2823040	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2823049	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2823054	0.94[EUR][1000 genomes]
rs2823056	0.94[EUR][1000 genomes]
rs2823061	0.81[EUR][1000 genomes]
rs2823062	0.80[EUR][1000 genomes]
rs2823065	0.80[EUR][1000 genomes]
rs4816486	0.80[EUR][1000 genomes]
rs4817650	0.80[EUR][1000 genomes]
rs719112	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760404	0.94[EUR][1000 genomes]
rs9977308	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16468400-16470600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr21:16468800-16470600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr21:16469400-16470800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links