Variant report

Variant	rs9977308
Chromosome Location	chr21:16477101-16477102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1003427	0.87[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1005526	0.88[EUR][1000 genomes]
rs1022450	0.93[EUR][1000 genomes]
rs1556286	0.87[CEU][hapmap];0.89[EUR][1000 genomes]
rs2150369	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2403877	0.93[EUR][1000 genomes]
rs2823040	1.00[CHB][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2823042	1.00[CHB][hapmap]
rs2823049	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2823054	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2823056	0.86[CEU][hapmap];0.91[EUR][1000 genomes]
rs719112	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760404	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834048	chr21:16324481-16489570	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv521517	chr21:16474158-16482643	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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