Variant report

Variant	rs2823089
Chromosome Location	chr21:16516054-16516055
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12482834	0.90[EUR][1000 genomes]
rs2049880	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823085	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823087	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823088	0.90[EUR][1000 genomes]
rs741937	0.90[EUR][1000 genomes]
rs926164	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs926166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16511200-16516200	Weak transcription	Adipose Nuclei	Adipose
2	chr21:16513000-16521600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr21:16514000-16516600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr21:16514600-16516400	Weak transcription	Pancreas	Pancrea
5	chr21:16514600-16519600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr21:16515000-16516600	Weak transcription	Small Intestine	intestine
8	chr21:16515200-16519400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr21:16516000-16516800	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr21:16516000-16516800	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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