Variant report

Variant	rs12482834
Chromosome Location	chr21:16516282-16516283
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16513967..16515749-chr21:16516008..16517669,2	MCF-7	breast:

rs_ID	r²[population]
rs11088311	0.81[ASN][1000 genomes]
rs12373912	0.81[ASN][1000 genomes]
rs12482303	0.81[ASN][1000 genomes]
rs12482386	0.81[ASN][1000 genomes]
rs12482761	0.81[ASN][1000 genomes]
rs12483016	0.81[ASN][1000 genomes]
rs12483602	0.81[ASN][1000 genomes]
rs1556283	0.81[ASN][1000 genomes]
rs1882959	0.81[ASN][1000 genomes]
rs1882963	0.81[ASN][1000 genomes]
rs2007783	0.95[ASN][1000 genomes]
rs2008843	0.95[ASN][1000 genomes]
rs2049880	0.90[EUR][1000 genomes]
rs2823085	0.90[EUR][1000 genomes]
rs2823086	0.91[ASN][1000 genomes]
rs2823087	0.90[EUR][1000 genomes]
rs2823088	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823089	0.90[EUR][1000 genomes]
rs2823091	0.95[ASN][1000 genomes]
rs2823093	0.95[ASN][1000 genomes]
rs2823096	0.95[ASN][1000 genomes]
rs2823106	0.95[ASN][1000 genomes]
rs2823110	0.81[ASN][1000 genomes]
rs2823111	0.81[ASN][1000 genomes]
rs2823112	0.81[ASN][1000 genomes]
rs2823113	0.81[ASN][1000 genomes]
rs2823115	0.81[ASN][1000 genomes]
rs2823117	0.81[ASN][1000 genomes]
rs2823119	0.81[ASN][1000 genomes]
rs2823122	0.81[ASN][1000 genomes]
rs2823123	0.81[ASN][1000 genomes]
rs2896680	0.95[ASN][1000 genomes]
rs2896689	0.81[ASN][1000 genomes]
rs55778206	0.81[ASN][1000 genomes]
rs55792425	0.95[ASN][1000 genomes]
rs55797017	0.81[ASN][1000 genomes]
rs55859143	1.00[ASN][1000 genomes]
rs62218221	0.95[ASN][1000 genomes]
rs62218223	0.95[ASN][1000 genomes]
rs62218224	0.81[ASN][1000 genomes]
rs62218225	0.81[ASN][1000 genomes]
rs62218995	0.81[ASN][1000 genomes]
rs62218996	0.81[ASN][1000 genomes]
rs741937	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8128132	0.81[ASN][1000 genomes]
rs926164	0.89[EUR][1000 genomes]
rs926166	0.90[EUR][1000 genomes]
rs990302	0.81[ASN][1000 genomes]

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16513000-16521600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr21:16514000-16516600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr21:16514600-16516400	Weak transcription	Pancreas	Pancrea
4	chr21:16514600-16519600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr21:16515000-16516600	Weak transcription	Small Intestine	intestine
7	chr21:16515200-16519400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr21:16516000-16516800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr21:16516000-16516800	Enhancers	Liver	Liver
10	chr21:16516200-16516400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr21:16516200-16516800	Enhancers	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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