Variant report

Variant	rs2823096
Chromosome Location	chr21:16522082-16522083
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16435777..16439778-chr21:16521354..16529405,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000180530	Chromatin interaction
ENSG00000236471	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11088311	0.86[ASN][1000 genomes]
rs12373912	0.86[ASN][1000 genomes]
rs12482303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12482386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12482761	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12482834	0.95[ASN][1000 genomes]
rs12483016	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]
rs12483602	0.86[ASN][1000 genomes]
rs1556283	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[ASN][1000 genomes]
rs1882959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1882963	0.86[ASN][1000 genomes]
rs2007783	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2008843	1.00[ASN][1000 genomes]
rs2142362	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2823086	0.87[ASN][1000 genomes]
rs2823088	0.95[ASN][1000 genomes]
rs2823091	1.00[ASN][1000 genomes]
rs2823093	1.00[ASN][1000 genomes]
rs2823106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.92[MEX][hapmap];1.00[ASN][1000 genomes]
rs2823110	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2823111	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2823112	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[MEX][hapmap];0.86[ASN][1000 genomes]
rs2823113	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2823115	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2823117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2823119	0.86[ASN][1000 genomes]
rs2823122	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2823123	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2896680	1.00[ASN][1000 genomes]
rs2896689	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[ASN][1000 genomes]
rs55778206	0.86[ASN][1000 genomes]
rs55792425	1.00[ASN][1000 genomes]
rs55797017	0.86[ASN][1000 genomes]
rs55859143	0.95[ASN][1000 genomes]
rs62218221	1.00[ASN][1000 genomes]
rs62218223	1.00[ASN][1000 genomes]
rs62218224	0.86[ASN][1000 genomes]
rs62218225	0.86[ASN][1000 genomes]
rs62218995	0.86[ASN][1000 genomes]
rs62218996	0.86[ASN][1000 genomes]
rs741937	1.00[ASN][1000 genomes]
rs8128132	0.86[ASN][1000 genomes]
rs990302	0.88[CEU][hapmap];1.00[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16514600-16529600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16517200-16526800	Weak transcription	Pancreas	Pancrea
3	chr21:16521400-16522200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr21:16521400-16522200	Enhancers	Fetal Intestine Large	intestine
5	chr21:16521400-16529600	Weak transcription	Adipose Nuclei	Adipose
6	chr21:16521600-16525600	Enhancers	HepG2	liver
7	chr21:16521800-16524800	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links