Variant report

Variant	rs2823204
Chromosome Location	chr21:16658943-16658944
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11088345	0.92[MEX][hapmap]
rs1111348	1.00[ASN][1000 genomes]
rs1111349	1.00[ASN][1000 genomes]
rs11701699	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1304524	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16981457	0.84[MEX][hapmap]
rs2823195	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823197	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823199	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2823202	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823208	0.92[MEX][hapmap]
rs4817784	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8128057	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8128542	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9305576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1056659	chr21:16646531-16709391	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2823204	USP25	cis	normal skin	skin_eQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16653000-16663600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr21:16655400-16663000	Weak transcription	HMEC	breast
3	chr21:16658200-16663000	Weak transcription	Psoas Muscle	Psoas
4	chr21:16658600-16662600	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr21:16658800-16659000	Enhancers	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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