Variant report

Variant	rs8128057
Chromosome Location	chr21:16644576-16644577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1111348	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1111349	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11701699	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1304524	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823195	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823197	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823202	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823204	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4817784	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8128542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9305576	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16636200-16653200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr21:16643200-16647000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16643600-16644800	Enhancers	Placenta	Placenta
4	chr21:16644000-16646000	Enhancers	Primary hematopoietic stem cells	blood
5	chr21:16644400-16644800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr21:16644400-16647000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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