Variant report

Variant	rs2823291
Chromosome Location	chr21:16844621-16844622
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs2823292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2823298	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2823299	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2823300	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2823302	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2823303	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2823304	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2823305	0.95[CEU][hapmap]
rs2823307	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2823308	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8133958	0.83[EUR][1000 genomes]
rs9977554	0.92[EUR][1000 genomes]
rs9978541	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16841800-16844800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr21:16841800-16844800	Weak transcription	Psoas Muscle	Psoas
3	chr21:16843600-16845600	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr21:16843800-16845000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr21:16844000-16845200	Enhancers	Liver	Liver
6	chr21:16844400-16844800	Enhancers	Adipose Nuclei	Adipose
7	chr21:16844400-16845200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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