Variant report

Variant	rs2823299
Chromosome Location	chr21:16855993-16855994
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2823291	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2823292	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2823298	0.85[EUR][1000 genomes]
rs2823300	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823301	0.81[EUR][1000 genomes]
rs2823302	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2823303	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2823304	0.83[EUR][1000 genomes]
rs2823305	0.81[EUR][1000 genomes]
rs2823307	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2823308	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8133958	0.81[EUR][1000 genomes]
rs9977554	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9978541	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16850400-16856200	Enhancers	Dnd41	blood
2	chr21:16850800-16858800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr21:16851200-16856400	Enhancers	Primary hematopoietic stem cells	blood
4	chr21:16854200-16856000	Enhancers	A549	lung
5	chr21:16855000-16856000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr21:16855200-16856000	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr21:16855200-16856400	Enhancers	HMEC	breast
8	chr21:16855400-16856000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr21:16855400-16856000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr21:16855400-16856000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr21:16855400-16856000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr21:16855400-16856000	Enhancers	Brain Anterior Caudate	brain
13	chr21:16855400-16856000	Enhancers	NHEK	skin
14	chr21:16855600-16857400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr21:16855600-16858800	Weak transcription	Liver	Liver
16	chr21:16855600-16858800	Weak transcription	HepG2	liver
17	chr21:16855800-16858600	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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