Variant report

Variant	rs2823329
Chromosome Location	chr21:16899144-16899145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11700488	0.85[EUR][1000 genomes]
rs2823327	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823334	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823341	0.86[EUR][1000 genomes]
rs2823344	0.86[EUR][1000 genomes]
rs2823351	0.85[EUR][1000 genomes]
rs9636640	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9636944	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv834049	chr21:16717421-16905300	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16894000-16899200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr21:16897400-16901600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr21:16898400-16901200	Enhancers	Primary hematopoietic stem cells	blood
4	chr21:16898600-16899400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr21:16898600-16899400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr21:16898600-16899600	Enhancers	Primary T cells from cord blood	blood
7	chr21:16898600-16899600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr21:16898800-16899400	Enhancers	Thymus	Thymus
9	chr21:16898800-16899600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr21:16898800-16899600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr21:16898800-16899600	Enhancers	Dnd41	blood
12	chr21:16899000-16899400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr21:16899000-16899600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr21:16899000-16899600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr21:16899000-16899600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr21:16899000-16901200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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