Variant report

Variant	rs2823344
Chromosome Location	chr21:16910447-16910448
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:16909677..16914012-chr21:16918687..16921004,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11700488	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11700593	0.83[EUR][1000 genomes]
rs17209432	0.83[EUR][1000 genomes]
rs2242839	0.83[EUR][1000 genomes]
rs2823327	0.86[EUR][1000 genomes]
rs2823329	0.86[EUR][1000 genomes]
rs2823334	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2823341	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823351	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2823360	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2823362	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2823364	0.83[EUR][1000 genomes]
rs2823365	0.84[EUR][1000 genomes]
rs2823366	0.84[EUR][1000 genomes]
rs2823367	0.84[EUR][1000 genomes]
rs2823368	0.83[EUR][1000 genomes]
rs2823369	0.82[EUR][1000 genomes]
rs2823374	0.83[EUR][1000 genomes]
rs34369299	0.83[EUR][1000 genomes]
rs35933536	0.82[EUR][1000 genomes]
rs4817963	0.88[EUR][1000 genomes]
rs4817965	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4817969	0.83[EUR][1000 genomes]
rs4817970	0.83[EUR][1000 genomes]
rs4817971	0.83[EUR][1000 genomes]
rs56314121	0.85[EUR][1000 genomes]
rs7275481	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7276904	0.83[EUR][1000 genomes]
rs7282382	0.89[EUR][1000 genomes]
rs73189607	0.84[EUR][1000 genomes]
rs73189608	0.84[EUR][1000 genomes]
rs8132059	0.90[EUR][1000 genomes]
rs9636640	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9636944	0.87[EUR][1000 genomes]
rs9976779	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16908200-16911600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr21:16908200-16911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:16909400-16911400	Weak transcription	Dnd41	blood
4	chr21:16909400-16911800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links