Variant report

Variant	rs2823360
Chromosome Location	chr21:16920132-16920133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16582273..16583330-chr21:16919552..16920500,4	MCF-7	breast:
2	chr21:16582142..16583084-chr21:16919391..16920395,4	MCF-7	breast:
3	chr21:16909677..16914012-chr21:16918687..16921004,3	MCF-7	breast:
4	chr21:16918481..16920234-chr21:16923318..16925112,2	MCF-7	breast:
5	chr21:16919633..16920412-chr21:16959232..16959914,4	MCF-7	breast:
6	chr21:16919601..16920251-chr21:16958950..16959914,3	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11700488	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11700593	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11701443	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11701475	0.83[AMR][1000 genomes]
rs11702005	1.00[YRI][hapmap]
rs17209432	0.94[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2242839	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823341	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2823344	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2823351	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2823362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2823364	0.94[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823365	0.94[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823366	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823367	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2823368	0.94[CEU][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2823369	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2823373	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2823374	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34369299	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35933536	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs460497	1.00[YRI][hapmap]
rs463566	1.00[YRI][hapmap]
rs4817963	0.96[EUR][1000 genomes]
rs4817965	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4817969	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4817970	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4817971	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56314121	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7275481	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7276904	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7282382	0.96[EUR][1000 genomes]
rs73189607	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73189608	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8132059	0.93[EUR][1000 genomes]
rs9636944	0.81[EUR][1000 genomes]
rs9976779	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1063385	chr21:16521617-16926212	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1064280	chr21:16664312-17049272	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1064621	chr21:16881027-16937290	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2758530	chr21:16912646-17096678	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2758810	chr21:16912646-17096678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16915400-16922200	Weak transcription	Colon Smooth Muscle	Colon

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