Variant report
| Variant | rs9976779 |
|---|---|
| Chromosome Location | chr21:16916958-16916959 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16912535..16914166-chr21:16914818..16917552,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs11700488 | 0.88[EUR][1000 genomes] |
| rs11700593 | 0.87[EUR][1000 genomes] |
| rs11701443 | 0.83[EUR][1000 genomes] |
| rs16986604 | 0.82[AFR][1000 genomes] |
| rs17209432 | 0.87[EUR][1000 genomes] |
| rs2242839 | 0.87[EUR][1000 genomes] |
| rs2823341 | 0.88[EUR][1000 genomes] |
| rs2823344 | 0.89[EUR][1000 genomes] |
| rs2823351 | 0.88[EUR][1000 genomes] |
| rs2823360 | 0.96[EUR][1000 genomes] |
| rs2823362 | 0.96[EUR][1000 genomes] |
| rs2823364 | 0.88[EUR][1000 genomes] |
| rs2823365 | 0.88[EUR][1000 genomes] |
| rs2823366 | 0.88[EUR][1000 genomes] |
| rs2823367 | 0.88[EUR][1000 genomes] |
| rs2823368 | 0.87[EUR][1000 genomes] |
| rs2823369 | 0.86[EUR][1000 genomes] |
| rs2823374 | 0.88[EUR][1000 genomes] |
| rs28516815 | 0.85[AFR][1000 genomes] |
| rs34369299 | 0.87[EUR][1000 genomes] |
| rs35933536 | 0.86[EUR][1000 genomes] |
| rs4817963 | 0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4817965 | 0.96[EUR][1000 genomes] |
| rs4817969 | 0.87[EUR][1000 genomes] |
| rs4817970 | 0.87[EUR][1000 genomes] |
| rs4817971 | 0.87[EUR][1000 genomes] |
| rs56314121 | 0.89[EUR][1000 genomes] |
| rs7275481 | 0.96[EUR][1000 genomes] |
| rs7276904 | 0.87[EUR][1000 genomes] |
| rs7282382 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs73189607 | 0.88[EUR][1000 genomes] |
| rs73189608 | 0.88[EUR][1000 genomes] |
| rs8132059 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9974047 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs9983447 | 0.85[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1063385 | chr21:16521617-16926212 | Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1064280 | chr21:16664312-17049272 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv1064621 | chr21:16881027-16937290 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2758530 | chr21:16912646-17096678 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | esv2758810 | chr21:16912646-17096678 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | TF binding regionChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16915400-16922200 | Weak transcription | Colon Smooth Muscle | Colon |
