Variant report

Variant	rs2830431
Chromosome Location	chr21:28089603-28089604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:27253758..27254760-chr21:28089313..28090047,3	MCF-7	breast:
2	chr21:27253821..27254751-chr21:28089157..28090031,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs120261	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs120262	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17063	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2251540	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs226261	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs226262	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs226263	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs226264	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs226287	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2830380	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2830409	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2830419	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2830428	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2830429	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2830433	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2952413	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34251764	0.93[EUR][1000 genomes]
rs461868	0.86[ASN][1000 genomes]
rs462985	0.85[ASN][1000 genomes]
rs773	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9636574	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs997333	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9974075	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9974728	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9977117	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28088000-28090000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:28088200-28090000	Enhancers	Dnd41	blood
3	chr21:28088800-28089800	Weak transcription	Brain Anterior Caudate	brain
4	chr21:28088800-28091000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr21:28089200-28090000	Enhancers	Fetal Kidney	kidney

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