Variant report

Variant	rs34251764
Chromosome Location	chr21:28081880-28081881
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs120261	0.80[EUR][1000 genomes]
rs120262	0.81[EUR][1000 genomes]
rs17063	0.87[EUR][1000 genomes]
rs2251540	0.85[EUR][1000 genomes]
rs226262	0.80[EUR][1000 genomes]
rs226287	0.81[EUR][1000 genomes]
rs2830380	0.83[EUR][1000 genomes]
rs2830409	0.88[EUR][1000 genomes]
rs2830419	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830428	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830429	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2830431	0.93[EUR][1000 genomes]
rs2830433	0.93[EUR][1000 genomes]
rs2952413	0.88[EUR][1000 genomes]
rs773	0.87[EUR][1000 genomes]
rs9636574	0.87[EUR][1000 genomes]
rs997333	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9974075	0.93[EUR][1000 genomes]
rs9974728	0.94[EUR][1000 genomes]
rs9977117	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28080000-28083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr21:28080000-28083600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr21:28081200-28082200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr21:28081600-28082600	Weak transcription	Dnd41	blood
5	chr21:28081800-28083000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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