Variant report

Variant	rs2835383
Chromosome Location	chr21:37902319-37902320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:37889840..37891789-chr21:37901394..37902895,2	MCF-7	breast:
2	chr21:37897297..37900061-chr21:37900789..37903284,3	K562	blood:
3	chr21:37894158..37897213-chr21:37901211..37904346,3	MCF-7	breast:
4	chr21:37900509..37902393-chr21:38014528..38016261,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HLCS-3	chr21:37901636-37904535	ucscGeneNc_uc002ywn_1

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11909578	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13046506	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13049189	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13049736	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1892908	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1892909	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2015187	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2187304	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2835382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2835388	0.86[EUR][1000 genomes]
rs2835389	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4817806	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4817807	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4817808	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6517361	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs70940557	0.86[EUR][1000 genomes]
rs8128229	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs914148	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9305590	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9305591	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9305592	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9305594	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9305595	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9653721	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9980855	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9981041	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834090	chr21:37812545-38009542	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1064290	chr21:37878964-37983133	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:37895800-37902600	Weak transcription	GM12878-XiMat	blood
2	chr21:37897000-37911600	Weak transcription	Pancreas	Pancrea
3	chr21:37902200-37903000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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